Load required packages for entire project

library(here)
source(here("script", "01_mainRSV.R"))

 

Run the archiving script to update the RSV dataset

source(here("script", "02_fileCache.R"))
source(here("script", "03_runIfExpired.R"))

 

Load RSV datasets

source(here("script", "04_loadRSVdata.R"))

 

Seasonal dynamics of RSV by WHO region

source(here("script", "05_seasRSV_region.R"))

 

Seasonal dynamics of RSV by Hemisphere

source(here("script", "06_seasRSV_hemi.R"))

 

Dynamics of RSV in African countries

source(here("script", "07_seasRSV_afr.R"))

 

Dynamics of RSV in South East Asian countries

source(here("script", "08_seasRSV_sear.R"))

 

Dynamics of RSV in Western Pacific countries

source(here("script", "09_seasRSV_wpr.R"))

 

Dynamics of RSV in Eastern Mediterranean countries

source(here("script", "10_seasRSV_emr.R"))

 

Dynamics of RSV in European countries

source(here("script", "11_seasRSV_eur.R"))

 

Dynamics of RSV in Americas countries

source(here("script", "12_seasRSV_amr.R"))

Dynamics of RSV in the United States of America

source(here("script", "13_seasRSV_usa.R"))
## 'data.frame':    520 obs. of  6 variables:
##  $ hemi    : chr  "NH" "NH" "NH" "NH" ...
##  $ region  : chr  "AMR" "AMR" "AMR" "AMR" ...
##  $ country : chr  "United States" "United States" "United States" "United States" ...
##  $ regionUS: chr  "North East" "North East" "North East" "North East" ...
##  $ date    : Date, format: "2021-01-23" "2021-01-30" ...
##  $ cases   : int  5 5 7 7 7 8 11 14 20 28 ...
## 'data.frame':    327542 obs. of  5 variables:
##  $ hemi    : chr  "NH" "NH" "NH" "NH" ...
##  $ region  : chr  "AMR" "AMR" "AMR" "AMR" ...
##  $ country : chr  "United States" "United States" "United States" "United States" ...
##  $ regionUS: chr  "North East" "North East" "North East" "North East" ...
##  $ date    : chr  "2021-01-23" "2021-01-23" "2021-01-23" "2021-01-23" ...
## 'data.frame':    327542 obs. of  5 variables:
##  $ hemi    : Factor w/ 1 level "NH": 1 1 1 1 1 1 1 1 1 1 ...
##  $ region  : Factor w/ 1 level "AMR": 1 1 1 1 1 1 1 1 1 1 ...
##  $ country : chr  "United States" "United States" "United States" "United States" ...
##  $ regionUS: chr  "North East" "North East" "North East" "North East" ...
##  $ date    : Date, format: "2021-01-23" "2021-01-23" ...
## 'data.frame':    104 obs. of  5 variables:
##  $ hemi   : chr  "NH" "NH" "NH" "NH" ...
##  $ region : chr  "AMR" "AMR" "AMR" "AMR" ...
##  $ country: chr  "United States" "United States" "United States" "United States" ...
##  $ date   : Date, format: "2021-01-23" "2021-01-30" ...
##  $ cases  : int  28 30 29 32 34 41 57 74 74 145 ...
## 'data.frame':    326932 obs. of  4 variables:
##  $ hemi   : chr  "NH" "NH" "NH" "NH" ...
##  $ region : chr  "AMR" "AMR" "AMR" "AMR" ...
##  $ country: chr  "United States" "United States" "United States" "United States" ...
##  $ date   : chr  "2021-01-23" "2021-01-23" "2021-01-23" "2021-01-23" ...
## 'data.frame':    326932 obs. of  4 variables:
##  $ hemi   : Factor w/ 1 level "NH": 1 1 1 1 1 1 1 1 1 1 ...
##  $ region : Factor w/ 1 level "AMR": 1 1 1 1 1 1 1 1 1 1 ...
##  $ country: chr  "United States" "United States" "United States" "United States" ...
##  $ date   : Date, format: "2021-01-23" "2021-01-23" ...
## 'data.frame':    10313 obs. of  5 variables:
##  $ hemi   : chr  "NH" "NH" "NH" "NH" ...
##  $ region : chr  "AMR" "AMR" "AMR" "AMR" ...
##  $ country: chr  "United States" "United States" "United States" "United States" ...
##  $ date   : Date, format: "2010-07-10" "2010-07-17" ...
##  $ cases  : int  0 0 0 0 0 0 0 0 1 1 ...
## 'data.frame':    620819 obs. of  4 variables:
##  $ hemi   : chr  "NH" "NH" "NH" "NH" ...
##  $ region : chr  "AMR" "AMR" "AMR" "AMR" ...
##  $ country: chr  "United States" "United States" "United States" "United States" ...
##  $ date   : chr  "2010-09-04" "2010-09-11" "2010-09-18" "2010-09-25" ...
## 'data.frame':    620819 obs. of  4 variables:
##  $ hemi   : Factor w/ 1 level "NH": 1 1 1 1 1 1 1 1 1 1 ...
##  $ region : Factor w/ 1 level "AMR": 1 1 1 1 1 1 1 1 1 1 ...
##  $ country: chr  "United States" "United States" "United States" "United States" ...
##  $ date   : Date, format: "2010-09-04" "2010-09-11" ...